Explore projects

ExploreMetabar is a shiny application used to explore metabarcoding data (16S, ITS) with interactive plots, integrated statistical tests, and differential analysis.

https://explore-metabar.sk8.inrae.fr

An R package for the distribution of the ratio of Gaussian distributions: density function, parameter estimation, simulation. Application to vegetation index, such as chlorophyll fluorescence index.

Series of tools to extract and plot MuSICA outputs

Formation (supports de cours et TP) sur l'analyse statistique de données RNA-seq Formation proposée par la plateforme Genotoul-Bioinfo

The SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.

Visualisation de données métagénomiques.

https://inspect.sk8.inrae.fr/

TP 2 du module 8 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/url/view.php?id=9208

Lien vers l'application : https://mastics-tp-8-2.sk8.inrae.fr

TP 1 du module 8 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/url/view.php?id=9206

Lien vers l'application : https://mastics-tp-8-1.sk8.inrae.fr

TP du module 5 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/quiz/view.php?id=9428

Lien vers l'application : https://mastics-tp-5.sk8.inrae.fr

TP du module 4 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/url/view.php?id=9054

Lien vers l'application : https://mastics-tp-4.sk8.inrae.fr

https://mastics-tp3.sk8.inrae.fr TP du module 3 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/course/view.php?id=419&section=0

Exploration interactive de scenario de simulation du modèle MF1.2-1ha du projet Atcha.

https://mf-12-1-ha.sk8.inrae.fr/ | https://shiny.sk8.inrae.fr/app/atcha-mf-12-1-ha | https://shiny.sk8.inrae.fr/app_direct/atcha-mf-12-1-ha