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PAPPSO / specoms
GNU General Public License v3.0 onlyC++ implementation of SpecOMS and new developments
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PAPPSO / i2MassChroQ
GNU General Public License v3.0 onlyi2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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PAPPSO / pappsomspp
GNU General Public License v3.0 onlyPAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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RADIS - Retrieve Agronomic Data in a Sector, R package support : https://umr-g-eau.pages-forge.inrae.fr/radis
The radis package aims to facilitate the extraction of environmental data from various cartographic or spatial sources or APIs. It allows for the retrieval of this information using specific spatial shape. This package also formats the extracted data in a way that makes it easily exploitable for further analysis.
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pepragrodiv / pangenome / pancons
GNU General Public License v3.0 or laterUpdated -
FME_team / F3M_Builder
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PAPPSO / MineXpert3
GNU General Public License v3.0 onlyMineXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to visualize mass spectrometric data in their full MS^n depth. Sophisticated mouse-driven mass data integrations are easily performed. It is the continuation of mineXpert2, ported to the rewrittent libXpertMass and libXpertMassGui libraries.
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Dynafor / Workflows / HedgeTools
GNU General Public License v2.0 or laterUpdated -
MIAT-Com / Site web MIAT
MIT LicenseSite web de MIAT, avec wowchemy (hugo).
Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages-forge.inrae.fr/miat_website
Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @samuel.buchet, @gauthier.quesnel, @philippe.bordron ou @rtrepos
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genotoul-bioinfo / metagWGS
GNU General Public License v3.0 onlymetagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
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PO2-Tools / PO²Manager
MIT LicenseUpdated -
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UMR G-EAU / RADIS.api
GNU Affero General Public License v3.0Updated -
IN-WOP / IRMaRA
GNU Affero General Public License v3.0Interactive Reservoir MAnagement Risk Assessment (IRMaRA) is a R Shiny interface providing probability of failure of flood and drought objective at key locations downstream of the 4 lakes regulating the Seine River.
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