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metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Présentation en ligne sur GitLab Pages

Projet de la version V2 de l'application des ORE.

Le projet est constitué de 2 sous projet :

La partie serveur qui fournit les web services de l'application

La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Still under development

System for Evaluation of Agriculture faiSability using indicatOrs combiNation Système d’évAluatIon de la faiSabilité climatique des productiONs agricoles

Chaîne de traitement (sélection, calcul) d’indicateurs agroclimatiques sur un ensemble de points géographiques. Elle est utilisée en tant que telle ou pour le calcul des indicateurs dans SICLIMA.

mechanistic-statistical environement

https://olivier.bonnefon.pages.mia.inra.fr/mse/

F3MR is a R package that help to analyze food microbiome omics data based on dedicated and curated metabolic modules based on extensive literature review. It belongs to F3M software suite developed by INRAE Food Microbial Ecology lab