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Le portail de données phénologiques du réseau TEMPO permet la recherche et le téléchargement de données issues de différentes sources ouvertes ou soumises à autorisation.

code R pour le calcul des valeurs de shapley d'un modèle d'apprentissage dans le cadre de la cartographie

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigCORE

What is “OptirrigCORE” package ? The OptirrigCORE package in R is based on the Optirrig model. It facilitates the extraction and formatting of observation data used by the model, as well as the integration of plant, soil and yield descriptions. It supports various analytical methods, such as Ex-Post and Ex-Ante analyses, with a view to drawing up an optimised irrigation schedule based on the criteria. The package includes all the calculation tools needed to describe biophysical processes with a generalist approach. It can be used as a dependency or complement to modify and reinterpret biophysical descriptions. What’s more, it automates the modeling process, the description of biophysical processes and the analysis of results and performance, guaranteeing a reproducible approach. It also makes it easy to compile results in automated reports.

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

This repository is a toolbox for PFEM's GitLab projects: templates for README, CI/CD, docker images, ...

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Source code of BIP software (Biological Image Processing)

The goal of this package is to help users in using Capsis software and compile reports for field workshops. The workshop consist in predicting management effects on forest stand with Samsara2 model within Capsis platform.

http://martelosim.lessem.forge.inrae.fr/

Pipeline Nextflow

Free-D libraries: a collection of C++ libraries

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

LESSEM internal package for simulation of forest dynamic depending on climatic variables

𝐂𝐀𝐖𝐄𝐓 (Calculation of Agronomical Water needs and EvapoTranspiration) is an open-source tool for automatic estimation of agricultural water needs