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OLD - STOPPED - NOT UPDATED - See now siwaa-resources/rsiwaa

This project has been used to develop the rsiwaa package. Once ready and tested, it has been delivered to siwaa-resources/rsiwaa. Development stopped. See now current project siwaa-resources/rsiwaa.

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

Présentation au format RMarkdown réalisée avec 'Xaringan' de formation au package R 'airGRiwrm'

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence.

https://shinemas2.readthedocs.io/

The SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.

Hosts the different implementation of EDA model

L'application permet de simuler la dynamique spatio-temporelle de populations de moustiques Aedes (albopictus et aegypti) dans divers environnements et la dynamique de transmission de trois arboviroses : dengue, zika, chikungunya.

Lien vers l'application : https://arbocarto-r-app.sk8.inrae.fr

PlantBreedGame est un logiciel mettant en place un serious game pour enseigner la sélection via l'exemple d'une espèce végétale annuelle fictive à des étudiants de niveau master.

https://plant-breed-game.sk8.inrae.fr