Explore projects

F3MR is a R package that help to analyze food microbiome omics data based on dedicated and curated metabolic modules based on extensive literature review. It belongs to F3M software suite developed by INRAE Food Microbial Ecology lab

Notes and Devs as Software user

The PFG2 shiny app aim is to help the user select and screen PFGs based on traits values both linked to the main ecological dimensions and to the ecosystem services modules as well as filters trait values.

https://pfg2.sk8.inrae.fr

https://metatoul.pages.mia.inra.fr/graphstats

A package build on top of airGRiwrm containing helper functions for pre-processing data and vignettes with a complete example of an integrated hydrological model setup from scratch and publicly available data.

Pan1c: a Snakemake workflow to build chromosome level pangenomes.

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

The 'rsiwaa' R package provides an API to help using, in R language, a Siwaa tool or a Siwaa workflow. It allows to upload input files, run the tool or the workflow, survey the running progression, and finally download output files.

A short tutorial on (1) fitting basic Weibull survival models in NIMBLE, and (2) two types of shrinkage prior (Dirichlet-Laplace & Horseshoe) for Bayesian variable selection. https://umr-astre.pages.mia.inra.fr/training/nimble-Weibull-Shrinkage

Formation (supports de cours et TP) sur l'analyse statistique de données RNA-seq Formation proposée par la plateforme Genotoul-Bioinfo