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System for Evaluation of Agriculture faiSability using indicatOrs combiNation Système d’évAluatIon de la faiSabilité climatique des productiONs agricoles

Chaîne de traitement (sélection, calcul) d’indicateurs agroclimatiques sur un ensemble de points géographiques. Elle est utilisée en tant que telle ou pour le calcul des indicateurs dans SICLIMA.

i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

PatHways lOngitudianal and diffErential aNanlysis in metabolomICS (PHOENICS). Perform differential analysis of metabolic pathways based on longitudinal metabolomics data.

Docs : https://optirrighive.pages-forge.inrae.fr/OptirrigCORE.api/dev/ Swagger : https://api.optirrig.g-eau.fr/__docs__/

Perform Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

Pipeline Nextflow

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence