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Contribution à la réalisation du "pilote" INRAE, dans le cadre du programme européen GraspOS

Connecteur entre dataverse et jupyterhub

Fichiers supports pour le cours de Biomathématiques - MAM4 EPU Nice Sophia

MANA: mMoA identification Assisted by modelling and Network Analysis.

Code and test case for the following article :

A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques

The 'rsiwaa' R package provides an API to help using, in R language, a Siwaa tool or a Siwaa workflow. It allows to upload input files, run the tool or the workflow, survey the running progression, and finally download output files.

OLD - STOPPED - NOT UPDATED - See now siwaa-resources/rsiwaa

This project has been used to develop the rsiwaa package. Once ready and tested, it has been delivered to siwaa-resources/rsiwaa. Development stopped. See now current project siwaa-resources/rsiwaa.

Wine Quality Project, a Use Case of Galaxy Platform and its REST API (doc, models, containers, Galaxy tools, use cases)

Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).

An end-to-end deep learning solution supporting multiple model architectures with advanced features for training, evaluation, and production-ready inference.

Modifications of GTNash for code readability - readability is entirely subjective! The original functionality should remain the same.

Atelier Recherche Reproductible INRAE - Pôle IMABS. 5 février 2021

Generate a population of individuals with SV, with paried end reads for each

Notebooks Jupyter