Explore projects

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

F3MR is a R package that help to analyze food microbiome omics data based on dedicated and curated metabolic modules based on extensive literature review. It belongs to F3M software suite developed by INRAE Food Microbial Ecology lab

Fish migration monitoring, database connection and treatment

Docker image based on ubuntu with VNC and QGIS

Toolbox for the inverse problem solution to identify sources of pheromone emission.

Travaux pratiques avec STAC (Spatio-temporal Assets Catalog)

A few notebooks for users and developers, showing how to use STAC to manipulate geospatial data.

OpenFLUID LandR library (formerly part of the OpenFLUID sources)

Python package for OpenFLUID

Node.js module for OpenFLUID

VScode extension for OpenFLUID

informations and configurations for OpenFLUID containerization

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

github mirror: https://github.com/MetExplore/dexom-python