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This project aims to create a opensilex instance running on docker-compose stack

MineXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to visualize mass spectrometric data in their full MS^n depth. Sophisticated mouse-driven mass data integrations are easily performed. It is the continuation of mineXpert2, ported to the rewrittent libXpertMass and libXpertMassGui libraries.

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Metabolic modelling of electrofermentation

Contribution à la réalisation du "pilote" INRAE, dans le cadre du programme européen GraspOS

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Site web de MIAT, avec wowchemy (hugo).

Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages-forge.inrae.fr/miat_website

Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @samuel.buchet, @gauthier.quesnel, @philippe.bordron ou @rtrepos

Nextflow pipeline creating a Neo4j Ortho_KB database.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.