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Scripts to interpolate SSEBop evapotranspiration data and estimate cumulated evapotranspiration by plot over a territory.

Policies definition for MTD's GDC in GitOps

Pan1c: a Snakemake workflow to build chromosome level pangenomes.

Communication materials

A pipeline to annotate proteins with names, products, EC numbers, GO terms. These annotations should be compliant with GenBank submission (tbl2asn validation included)

The goal of this package is to help users in using Capsis software and compile reports for field workshops. The workshop consist in predicting management effects on forest stand with Samsara2 model within Capsis platform.

http://martelosim.lessem.forge.inrae.fr/

EuGene Eukaryote Pipeline - Nextflow rewrite of the legacy pipeline

Python code to map metabolites (including lipids) to metabolic networks using ontology.

https://ssnmr.sk8.inrae.fr

Docs : https://optirrighive.pages-forge.inrae.fr/OptirrigCORE.api/dev/ Swagger : https://api.optirrig.g-eau.fr/__docs__/

Partie documentation d'AgroMetInfo.

LESSEM internal package for simulation of forest dynamic depending on climatic variables

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.