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PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

Source code of BIP software (Biological Image Processing)

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Source code of BIP software (Biological Image Processing)

Source code of BIP software (Biological Image Processing)

This RDF dataset contains the measurements generated by one of the meteorological stations that Irstea owns in its experimental farm at Montoldre. The dataset contains measurements collected from August 2018 up to day. This dataset is updated daily.

pdf2blocs merge the resultS of two others softwares pdftotext and pdftohtml. The pdf conversion was optimized to translate the Plant Health Alert Bulletin into html files. This project is part of the d2kab project.

version TSCF du projet D2KAB dédié à la tache 4.3 sur le navigateur augementé des Bulletins de SAnté du Végétal (BSV). TSCF version of the D2KAB project dedicated to augmented semantic reader for Plant Health Bulletins (PHB)

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

Bibliothèque cliente Java pour utiliser l'API issues de GitLab pour les demandes de support des applications AgroClim.

FAIR-DATA management application stack for laboratory experiment

MAGE est un logiciel de simulation monodimensionnelle d'écoulement en rivière en régime transitoire. Son domaine d'application privilégié est la simulation des crues et des zones inondées. Les équations utilisées sont les équations de Saint-Venant.

Simulation du transport de polluant et de sédiments fins en suspension (MES) dans un écoulement 1D. Ce code est couplé (couplage en cascade sans rétroaction) avec MAGE

Still under development

This repository contains the python code of the Marked-Release-Recapture simulator.