Issues · GEAPSI-Bioinfo / pipeline / specifics_alignmarkers · GitLab

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Issue Pipeline_can_handle_several_input_csv_files

#21 created 2 weeks ago by AUNEAU Camille Improve_input_files
enhancement
Issue Inclusion_of_not_SNP_markers

#20 created 2 weeks ago by AUNEAU Camille
enhancement
Issue Obtain a global script for statistics

#19 created 3 weeks ago by AUNEAU Camille
enhancement
updated 3 weeks ago
Issue Obtain the position of the polymorphism on the aligned marker and check polymorphism in the CIGAR class.

#18 created 1 month ago by AUNEAU Camille Improve filter_alignment.py
updated 1 month ago
Issue Create a class to work on the Alignement on one marker on a genomic sequence with long CIGAR format.

#17 created 1 month ago by AUNEAU Camille Improve filter_alignment.py
updated 1 month ago
Issue Conda conflict between the different pakages (matplotlib, pandas) on server

#15 created 1 month ago by Ha Trang Phung
bug critical
updated 1 month ago
Incident Crash when the ID is chr_pos but the reference is not the same as the one used in the vcf (legacy ID)

#14 created 1 year ago by Jonathan Kreplak
bug
updated 1 year ago
Issue Find a better way to provide a fake file of the polymorphism position when none exists to filterAlignment

#13 created 1 year ago by Baptiste Imbert
enhancement
updated 1 year ago
Issue Externalize all functions related to the reading and basic analysis of the PAF format

#12 created 1 year ago by Baptiste Imbert
updated 1 year ago
Issue If a marker is multi-aligned with identical quality, extend the size of the marker's context sequence using the reference genome

#9 created 1 year ago by Baptiste Imbert
enhancement suggestion
updated 1 year ago
Issue Change all utf-8 encoding for inputs to utf8-sig to avoid BOM

#6 created 1 year ago by Baptiste Imbert
updated 1 year ago
Issue Create uniform format for the position of polymorphism (not really BED format now)

#5 created 1 year ago by Baptiste Imbert
updated 1 year ago
Issue The example dataset does not include markers with multi-alignments filtered by score or length

#4 created 1 year ago by Baptiste Imbert
updated 1 year ago