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Répertoire pour trouver les documents de la session 1 de la Formation R - les bases

Répertoire pour trouver les documents de la session 1 de la Formation R - les bases

Simulation tool to investigate the Consequences of Altered Recombination on the Efficiency of Breeding

Validation of a qualitative risk assessment of Foot-and-Mouth Disease in Tunisia with observed data. https://umr-astre.pages.mia.inra.fr/fmd_risk_validation/

Source code for shiny app PEREpigenomics: Profile Explorer of Roadmap Epigenomics data Pre-processing scritps: https://github.com/gdevailly/perepigenomicsAnalysis

Dispersion of Culicoides imicola using friction maps https://umr-astre.pages.mia.inra.fr/culicoides-friction

R codes to run Decafs on the B. Subtilis analysis RNA dataset of P. Nicolas et al. 2009

A quick overview of the changes of Covid-19 mortality in the most affected countries of the European Union + the United Kingdom and of Africa. https://umr-astre.pages.mia.inra.fr/covid19-mortality/

Atelier Recherche Reproductible INRAE - Pôle IMABS. 5 février 2021

Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)

Model of the dynamics of population for French farmers that includes two processes, an installation process and a retirement process. Model calibrated by ABC.

Pipeline to analyze gene expression and organellar gene expression specificities (C-to-U RNA editing, splicing and processing) from RNAseq data. It conducts mapping-counting steps and differential analysis for gene expression, splicing and editing.