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Tropolink backend (API)

A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

This repository contains the scripts used to produce the experiments presented in

Jorge E., Hocking T.D., Neuvial P., Vialaneix N., and Foissac S. (2025) Posthoc inference for interpretable Hi-C differential analysis. preprint

These experiments aims at illustrating the use of the R package hicream that performs differential analysis of Hi-C data.

panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.

Vue3 / NodeJS libraries providing webcomponents to easily query the FORVM resources.

GeneralDichotomy: a general multi-objective optimization package

This project aims to create a opensilex instance running on docker-compose stack

A fork of GRNBoost2 arboreto from https://github.com/aertslab/arboreto.git at 11/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression.

This Vue.js3/Vuetify library contains webcomponents that can be re-used in any other compatible NodeJS libraries / client.

Analysis and figure production for Ts estimation and stomatal conductance method comparison.