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Mirroring of TETIS-NLP organisation on github. Mirroring is manual: see issue #1 to do so

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

A Python scripting interface for CB-Geo MPM

Perform Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

Interekt (INTERactive Exploration of Kinematics and Tropisms) is a user-friendly software for tracking and modeling plant motions.

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

STAC tools to simplify STAC use: local STAC creation, filter and process STAC ItemCollections (local and remote).

Documentation

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

Public git repository for reproduction of analyses in Le Souchu et al. 2025 (https://doi.org/10.1101/2024.07.01.601558)

Web page for ETLMIC : https://etlmic.pages-forge.inrae.fr/web/

old: https://etlmic.pages.mia.inra.fr/web/

It contains the simulator of the model DISTIGRI describe in the work https://link.springer.com/article/10.1007/s10530-023-03062-y