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Landscape Epidemiology and Evolution R package

Docs

CRAN

Shiny app || Shiny Multi app

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

RCALI package porting for new R versions

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

MineXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to visualize mass spectrometric data in their full MS^n depth. Sophisticated mouse-driven mass data integrations are easily performed. It is the continuation of mineXpert2, ported to the rewrittent libXpertMass and libXpertMassGui libraries.

SMITID data visualisation using htmlwidget (with d3js) and Shiny compatible.

OpenFLUID framework and applications

mechanistic-statistical environment

https://msegrp.pages-forge.inrae.fr/mse