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BioMa component of the phenology model in SiriusQuality2

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigCORE

What is “OptirrigCORE” package ? The OptirrigCORE package in R is based on the Optirrig model. It facilitates the extraction and formatting of observation data used by the model, as well as the integration of plant, soil and yield descriptions. It supports various analytical methods, such as Ex-Post and Ex-Ante analyses, with a view to drawing up an optimised irrigation schedule based on the criteria. The package includes all the calculation tools needed to describe biophysical processes with a generalist approach. It can be used as a dependency or complement to modify and reinterpret biophysical descriptions. What’s more, it automates the modeling process, the description of biophysical processes and the analysis of results and performance, guaranteeing a reproducible approach. It also makes it easy to compile results in automated reports.

Dépôt du site internet de la plateforme Genotoul-biostat

GraphstatsR est une application permettant le l'analyses de données de quantification métabolomiques prétraitées (MS, RMN). Elle permet la génération d'analyse descriptive (ACP), de représentations graphiques type boxplot avec tests statistiques associées, cela avec une interactivité permettant à l'utilisateur d'ajuster au mieux les analyses. Cette application peut traiter des données issues d'autres méthodes à condition de fournir des fichiers d'entrée au bon format. https://graphstatsr.sk8.inrae.fr

Repository code for the article: Neuvial Pierre, Randriamihamison Nathanaël, Chavent Marie, Foissac Sylvain, and Vialaneix Nathalie (2023) A two-sample tree-based test for hierarchically organized genomic signals. Preprint.

UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

job array allows managing list of jobs execution across sge and PBS scheduler system. each job is considered as an independent task. DAG management is also possible by defining constraints between job array

Galaxy wrappers for FROGS

Présentation en ligne sur GitLab Pages inspiré par Formation INRAE PACA

Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"

https://mahendra-mariadassou.pages.mia.inra.fr/jc2bim2024/

Project related to the development of a basket for RARe portal (https://urgi.versailles.inrae.fr/rare).

Gestion des collections d'échantillon - management of samples collections

Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"

Hosts the different implementation of EDA model

Geomatic tool for landscape discretization and pesticides transfert