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GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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URGI-Anagen / panREPET
CeCILL Free Software License Agreement v2.0panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
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Gauthier Quesnel / irritator
MIT LicenseUpdated -
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GANGLOFF Hugo / xpcax
OtherUpdated -
umrf / ranomaly
GNU General Public License v3.0 or laterUpdated -
Scanner3D / AnalyseMorphologique
MIT LicenseUpdated -
seqOccIn / HiFi metabarcoding analysis
GNU General Public License v3.0 or laterUpdated -
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SK8 / journee_shiny_inrae / edition_2025
Etalab Open License 2.0Updated -
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Omnicrobe / text-mining-workflow
Apache License 2.0Updated -
GQE-ABISoft / Thaliadb
GNU Affero General Public License v3.0Updated -
Traduction française des FAIR4RS Principles (voir README)
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UMR GDEC / magatt
GNU General Public License v3.0 or laterPipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.
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GQE-ABISoft / DiverCILand
GNU Affero General Public License v3.0Updated