Explore projects

Technical presentation: Options for validating national risk maps using data from surveillance national programs. F Muñoz, R Lancelot (CIRAD). https://umr-astre.pages.mia.inra.fr/presentations/2022_eufmd-seen_risk-validation

This project contains the code used to produce the results from the following article: Mélanie Debelgarric & Charlotte Récapet (2025). Exploring physiological constraints on life-history traits using Dynamic Energy Budgets. Ecological Modelling, 501:110993.

DOI: https://doi.org/10.1016/j.ecolmodel.2024.110993

Article on the publisher platform: https://www.sciencedirect.com/science/article/pii/S0304380024003818

ExploreMetabar is a shiny application used to explore metabarcoding data (16S, ITS) with interactive plots, integrated statistical tests, and differential analysis.

https://explore-metabar.sk8.inrae.fr

Introduction à la modélisation statistique

https://elisemaigne.pages.mia.inra.fr/slides/surapprentissage/

Hardware description and pieces of software for DIY MiniRead 96-well plate optical reader, designed to monitor growth kinetics of yeast (or bacterial) cells.

pubilc repository for the Ambhas groundwater model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/ambhas_cpp/

Développement d’une petite application Shiny et déploiement de celle-ci avec sk8, animé par Amandine Velt (SVQV) et Joseph Tran (EGFV) [AG CATI BARIC La Rochelle, 26-28/03/2024]

slides: https://baric.pages.mia.inra.fr/quarto-shiny-sk8

tutoriel: https://forgemia.inra.fr/baric/shiny-tutorial

Doc : https://ecoelec.pages.mia.inra.fr/ecoelecAnalysis/index.html

This project is the source repository of the CRAN package 'SOMbrero' https://cran.r-project.org/package=SOMbrero.

The stochastic (also called on-line) version of the Self-Organising Map (SOM) algorithm is provided. Different versions of the algorithm are implemented, for numeric and relational data and for contingency tables as described, respectively, in Kohonen (2001) isbn:3-540-67921-9, Olteanu & Villa-Vialaneix (2005) doi:10.1016/j.neucom.2013.11.047 and Cottrell et al (2004) doi:10.1016/j.neunet.2004.07.010. The package also contains many plotting features (to help the user interpret the results), can handle (and impute) missing values and is delivered with a graphical user interface based on 'shiny'.

version TSCF du projet D2KAB dédié à la tache 4.3 sur le navigateur augementé des Bulletins de SAnté du Végétal (BSV). TSCF version of the D2KAB project dedicated to augmented semantic reader for Plant Health Bulletins (PHB)

AgroforesTreeAdvice est un comparateur d’avis sur les essences d’arbres à planter en agroforesterie: il regroupe, sous une interface unique et multilingue, plusieurs outils de sélection d'arbres (espèces, variétés, porte-greffes) développés dans plusieurs pays.

https://agroforestreeadvice.sk8.inrae.fr

pubilc repository for the MF1_2 farm model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/mf1_2/

pubilc repository for the ASCROM crop model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/ascrom/

pubilc repository for the GroundWaterNitrogen nitrogen content in groundwater model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/groundwaternitrogen/

pubilc repository for the PumpPotential pump flow model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/pump-potential/

This RDF dataset contains the measurements generated by one of the meteorological stations that Irstea owns in its experimental farm at Montoldre. The dataset contains measurements collected from August 2018 up to day. This dataset is updated daily.