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Package d'aide à la qualité et au nettoyage des données pour les plateformes ESV (santé végétale), ESA (santé animale) et SCA (sécurité chaine alimentaire).

Vignette : https://plateformes-epidemiosurveillance.pages-forge.inrae.fr/interplateformes/gt-qdd/package-qdd/how_to_use_qdd.html

Library to manage in Fortran machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigCORE

What is “OptirrigCORE” package ? The OptirrigCORE package in R is based on the Optirrig model. It facilitates the extraction and formatting of observation data used by the model, as well as the integration of plant, soil and yield descriptions. It supports various analytical methods, such as Ex-Post and Ex-Ante analyses, with a view to drawing up an optimised irrigation schedule based on the criteria. The package includes all the calculation tools needed to describe biophysical processes with a generalist approach. It can be used as a dependency or complement to modify and reinterpret biophysical descriptions. What’s more, it automates the modeling process, the description of biophysical processes and the analysis of results and performance, guaranteeing a reproducible approach. It also makes it easy to compile results in automated reports.

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

XyDyS (Xylogenesis Dynamics Simulator) is a software for interactive exploration of computational models of wood formation.

R script to compute trees cartesian coordinates from field measures in polar coordinates.

ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity. Visualization, Semantic similarity and Enrichment Analysis of Gene Ontology.

https://umr-astre.pages.mia.inra.fr/sit-methods/