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LESSEM internal package for simulation of forest dynamic depending on climatic variables

Présentation en ligne sur GitLab Pages

Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/

Tutoriel pour le package R data.table.

Accompagne les supports de cours : https://elisemaigne.pages-forge.inrae.fr/2023-datatable/index.html.

Voir le README pour le lancement du tutoriel.

Outil d'interrogation PO²

Application de reporting / datavisualisation qui a pour objectif de fournir une série d’indicateurs visuels et synthétiques représentatifs des volumes d’interventions sur les postes de secours ayant pris part au projet SWYM pour la collecte numérique de données via ODK.

https://smgbl-pcdep.sk8.inrae.fr

https://metatoul.pages.mia.inra.fr/graphstats

Sylvaclim prototype app

https://explore-metabar.sk8.inrae.fr/

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigCORE

What is “OptirrigCORE” package ? The OptirrigCORE package in R is based on the Optirrig model. It facilitates the extraction and formatting of observation data used by the model, as well as the integration of plant, soil and yield descriptions. It supports various analytical methods, such as Ex-Post and Ex-Ante analyses, with a view to drawing up an optimised irrigation schedule based on the criteria. The package includes all the calculation tools needed to describe biophysical processes with a generalist approach. It can be used as a dependency or complement to modify and reinterpret biophysical descriptions. What’s more, it automates the modeling process, the description of biophysical processes and the analysis of results and performance, guaranteeing a reproducible approach. It also makes it easy to compile results in automated reports.

Docs : https://optirrighive.pages-forge.inrae.fr/OptirrigCORE.api/dev/ Swagger : https://api.optirrig.g-eau.fr/__docs__/

What is “OptirrigCORE.api” package ?

OptirrigCORE.api is a small R package that turns the core functions of OptirrigCORE into a web service. Built on top of Plumber, it makes it possible to start projects, load configurations, prepare simulation inputs, run irrigation models and retrieve results—all over HTTP instead of inside an R session.

𝐂𝐀𝐖𝐄𝐓 (Calculation of Agronomical Water needs and EvapoTranspiration) is an open-source tool for automatic estimation of agricultural water needs