Explore projects

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

Galaxy wrappers for FROGS

Docs : https://optirrighive.pages-forge.inrae.fr/OptirrigCORE.api/dev/ Swagger : https://api.optirrig.g-eau.fr/__docs__/

What is “OptirrigCORE.api” package ?

OptirrigCORE.api is a small R package that turns the core functions of OptirrigCORE into a web service. Built on top of Plumber, it makes it possible to start projects, load configurations, prepare simulation inputs, run irrigation models and retrieve results—all over HTTP instead of inside an R session.

Fish migration monitoring, database connection and treatment

DeFIS is a pipeline for archeo-ichtyologists and biologists allowing the recognition of diadromous fishes with ancient DNA sample based metrics method (such as Kmers ratio and Jaccard index) between references sequences and the samples.

Dépôt du site internet de la plateforme Genotoul-biostat

Support de formation pour la formation Git Gitlab sur le centre INRAE de Toulouse

Fork de Présentation en ligne sur GitLab Pages (PACA)

This repository is a toolbox for PFEM's GitLab projects: templates for README, CI/CD, docker images, ...

Repository code for the article: Neuvial Pierre, Randriamihamison Nathanaël, Chavent Marie, Foissac Sylvain, and Vialaneix Nathalie (2023) A two-sample tree-based test for hierarchically organized genomic signals. Journal of the Royal Statistical Society, Series C, 73(3), 774–795. https://dx.doi.org/10.1093/jrsssc/qlae011

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence.

https://shinemas2.readthedocs.io/

Sirius Quality BioMa Wheat LAI module

Présentation en ligne sur GitLab Pages

Repository containing input and output datasets to perform tests on metaGWGS

Experimental data vizualization for FAANG.

Outil d'interrogation PO²

Application de reporting / datavisualisation qui a pour objectif de fournir une série d’indicateurs visuels et synthétiques représentatifs des volumes d’interventions sur les postes de secours ayant pris part au projet SWYM pour la collecte numérique de données via ODK.

https://smgbl-pcdep.sk8.inrae.fr

Ajustement de différents modèles statistiques de courbes de réponse (réponse culture vs indicateur de disponibilité en éléments minéraux du sol).

Lien vers l'application : https://justep.sk8.inrae.fr