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Command line tool to compute volume of soil samples from images to estimate soil bulk density as in

Coulouma G, Feurer D, Vinatier F, Huttel O. Assessing new sensor-based volume measurement methods for high-throughput bulk density estimation in the field under various soil conditions. Eur J Soil Sci. 2021; 72: 2049–2061. https://doi.org/10.1111/ejss.13115

Contribution à la réalisation du "pilote" INRAE, dans le cadre du programme européen GraspOS

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

search a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vinifera. https://doi.org/10.

massXpert (of the http://www.msxpertsuite.org software collection) is a program that allows one to define brand new polymer chemistry definitions, to use them to define polymer sequences and to perform a large array of chemical simulations on them.

Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).

select or stitch the best image for each uplot and save it in "selected_images" directory

Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

Galaxy wrappers for met4j apps

Work during my internship at IRHS. A new method of visualization for displaying metadata changes in an iterative biclustering algorithm

erecord web services, web solutions for VLE models of RECORD platform

Application python pour controler la conformité d'un fichier json en fournissant un schéma json.

Tropolink backend (API)