Explore projects

xaaxaam is a set of scripts, written in R and python, aiming at producing high-resolution land-use maps from multi-sensors satellite imagery and ground-truth polygons.

Implementation of a PDMP model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).

Beyond project

Python code to map metabolites (including lipids) to metabolic networks using ontology.

TPMP Supervision repository

Script to generate a feature table file (.tbl) from GFF annotation and its corresponding fasta file.

Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes

Pystac extension for Product implementing https://stac-extensions.github.io/product/v0.1.0/schema.json

Companion code to the publication 'Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy', Ravel et al.