Explore projects

This project aims to create a opensilex instance running on docker-compose stack

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

GenoFig is a tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It was designed to be as easy to use as possible for biologists.

Pipeline Nextflow

The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.

Creation and provisioning a Mac OS VirtualBox with R4 tools chain and use it as a GitLab Runner.

Harvest and index meta data from BrAPI endpoints for data access through the plant-faidare data lookup portal (https://github.com/elixir-europe/plant-faidare).

scripts to remap markers as pairs of bait sequences or context sequences.

RNAseq and EMseq analyses for the rosepigs project on stomach mucosa samples

Repository containing input and output datasets to perform tests on metaGWGS

An end-to-end deep learning solution supporting multiple model architectures with advanced features for training, evaluation, and production-ready inference.

Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"

Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.