Explore projects

ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity. Visualization, Semantic similarity and Enrichment Analysis of Gene Ontology.

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

XyDyS (Xylogenesis Dynamics Simulator) is a software for interactive exploration of computational models of wood formation.

FrenchCropUsage is a thesaurus of types of crops, organized according to their destination (direct human food, animal feed, food industry, etc) and the type of culture system (field crop, market gardening, etc.).

R script to compute trees cartesian coordinates from field measures in polar coordinates.

https://umr-astre.pages.mia.inra.fr/sit-methods/

PatHways lOngitudianal and diffErential aNanlysis in metabolomICS (PHOENICS). Perform differential analysis of metabolic pathways based on longitudinal metabolomics data.

AdducTrackR is an R package designed to compute all possible peptide oligomers from the exact masses of proteinogenic amino acids, for any specified degree of oligomerization. It supports in silico modeling of peptide-polyphenol interactions to assist in the annotation of high-resolution mass spectrometry data.

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.