Explore projects

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigTOOLS

OptirrigTOOLS is a lightweight R package meant to gather diverse helper functions used across the Optirrig ecosystem.

LESSEM internal package for simulation of forest dynamic depending on climatic variables

MSNet main workflows and tutorial to process untargeted LCMS metabolomics data

A simple pipeline to assemble bacterial genomes from ONT sequencing

Source code of BIP software (Biological Image Processing)

Repo for scripts or plugins that allow to do Time-SIFT processing with different software.

docker compose configs to use robots with tirrex workspace

SATLAND is an application to detect and characterize hotspots of change. It is based on Python libraries (xarray, Bfast, rasterio for back-end, Streamlit for Front-End)

Code and workflows for the analyses reported in “Dici: a novel DNA transposon reshaping the genome of the opportunistic yeast Diutina catenulata”

Formation (supports de cours et TP) sur l'analyse statistique de données RNA-seq Formation proposée par la plateforme Genotoul-Bioinfo

a crop simulation model for sunflower

https://sunflo.pages-forge.inrae.fr/sunflower/