Explore projects

An hybrid tool to accurately scaffold genomes using Hi-C and Deep-Learning.

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Présentation en ligne sur GitLab Pages

An R script to batch calculate phenological quantiles from Captrap automated traps csv files

Still under development

Ontologies

i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

DeFIS is a pipeline for archeo-ichtyologists and biologists allowing the recognition of diadromous fishes with ancient DNA sample based metrics method (such as Kmers ratio and Jaccard index) between references sequences and the samples.

https://lisc.pages.mia.inra.fr/geopat/

Spatial multi-objectives optimization tool for identifying compatibles cultural scenarios for the "Projet Alimentaire Territorial" Grand-Clermont/PNR-Livradois-Forez.

Tropolink backend (API)

RADIS - Retrieve Agronomic Data in a Sector, R package support : https://umr-g-eau.pages-forge.inrae.fr/radis

The radis package aims to facilitate the extraction of environmental data from various cartographic or spatial sources or APIs. It allows for the retrieval of this information using specific spatial shape. This package also formats the extracted data in a way that makes it easily exploitable for further analysis.

Une interface web qui regroupe l’ensemble des données scRNAseq publiées chez les plantes légumineuses afin de les rendre accessible à la communauté internationale et servir de site de référence.

https://legumes-singlecell-atlas.sk8.inrae.fr

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).