Explore projects

This a the private clone archive of toulbar2. The real project is on GitHub. This one contains the "diverse solution" branch that needs to be pulled in the main repo (master)

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

CarthaGène is multi-population genetic/radiated hybrid mapping software. CarthaGene looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms.

Work during my internship at IRHS. A new method of visualization for displaying metadata changes in an iterative biclustering algorithm

Guidelines pour modèles mixtes

Dépôts contenant les fichiers de construction et codes liés au microscope SPIM du PIAF

Explores a neo4j database according to some application logic

PAQmiR : Prediction Annotation and Quantification of miRNA with miRDeep2

R'MESPlot est une application permettant l'exploitation interactive des résultats générés avec le logiciel R'MES.

job array allows managing list of jobs execution across sge and PBS scheduler system. each job is considered as an independent task. DAG management is also possible by defining constraints between job array

Documents des cours

Méthodes de preuves, optimisation et satisfaction de contraintes (MPOSC) M2R IA, UPS Toulouse. Modélisation probabiliste et Algorithmes pour la Biologie (MAB) M2R IA, UPS Toulouse. Graphes et réseaux, SupAero Toulouse.

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.