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Bisulfite Sequencing Processing Software : Snakemake Pipeline

HIPL stands for heavy isotope protein labelling. It is basically a project where we use IsoSpecPy for simulating isotopic clusters of peptides that were labelled with 15N.

The development of RootStemExtractor has been moved to https://forgemia.inra.fr/felix.hartmann/interekt

DIVIS: a semantic DIstance to improve the VISualization of incomplete heterogeneous phenotypic datasets

Given a text file with shell command lines, mpiarray executes these lines in an MPI context and run as many as possible in parallel

Experimental data vizualization for FAANG.

Pompd: Positive Multistate Protein Design

Une CLI pour le contrôle d'un cluster kubernetes en python.

Permet de démarrer des "VM" et des grilles condor avec un accès SSH.

a simple python scripts to lexed ingredients lists into dictionnaries and/or nested lists

Nextflow GenomOrder pipeline

DeepGNN: Semi-supervised deep learning with graph neural network for cross-species regulatory sequence prediction

Benchmark second and third generation sequencing technologies on 3 synthetic microbial communities

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.