Explore projects

Le projet IlluminaMetabarcodingPipeline a pour but de traiter des séquences issues de séquençage à très haut débit Illumina MySeq et d'en découvrir des modèles

pathway variability analysis using the miom library

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

Live Mouse Tracker analysis

Companion code to the publication 'Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy', Ravel et al.

Pour projets SeaTech sur la Fast Marching Method

Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).

Benchmark second and third generation sequencing technologies on 3 synthetic microbial communities