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Pipeline Nextflow

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

Hosts the different implementation of EDA model

Harvest and index meta data from BrAPI endpoints for data access through the plant-faidare data lookup portal (https://github.com/elixir-europe/plant-faidare).

https://guillaume-perreal.pages-forge.inrae.fr/blog/

A fork of Deep learning VAE DeepSEM from https://github.com/HantaoShu/DeepSEM.git at 18/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression

Code and workflows for the analyses reported in “Dici: a novel DNA transposon reshaping the genome of the opportunistic yeast Diutina catenulata”

Pan1c: a Snakemake workflow to build chromosome level pangenomes.

A pipeline to annotate proteins with names, products, EC numbers, GO terms. These annotations should be compliant with GenBank submission (tbl2asn validation included)