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All scripts concerning GBS analysis

Bisulfite Sequencing Processing Software : Snakemake Pipeline

report from a BAM alignment the number of BX:Z: tags shared between to blocks of given size

Docker files to test and deploy dgenies

The development of RootStemExtractor has been moved to https://forgemia.inra.fr/felix.hartmann/interekt

Implements in R the Rothamsted RothC package. Adds useful functions.

Une CLI pour le contrôle d'un cluster kubernetes en python.

Permet de démarrer des "VM" et des grilles condor avec un accès SSH.

DeepGNN: Semi-supervised deep learning with graph neural network for cross-species regulatory sequence prediction

Benchmark second and third generation sequencing technologies on 3 synthetic microbial communities

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. It has been developed in collaboration with several CATI BIOS4biol agents.

Spike and slab variable selection in nonlinear models

2h workshop slideshow on how to use Rmarkdown format for writing reproducible report (or slideshow, or even paper)

simulateur de l'invasion du moustique Aedes