Explore projects

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

Repository containing input and output datasets to perform tests on metaGWGS

Fish migration monitoring, database connection and treatment

Harvest and index meta data from BrAPI endpoints for data access through the plant-faidare data lookup portal (https://github.com/elixir-europe/plant-faidare).

DeFIS is a pipeline for archeo-ichtyologists and biologists allowing the recognition of diadromous fishes with ancient DNA sample based metrics method (such as Kmers ratio and Jaccard index) between references sequences and the samples.

fichiers de support pour EDO Sys Dyn - MAM3 EPU Nice Sophia

Sylvaclim prototype app

Source code of BIP software (Biological Image Processing)

Nextflow pipeline to extract syntenic blocks using the MCScanX program.