Explore projects

Link to running app: https://matrixapp.sk8.inrae.fr

MATRiX is a shiny application dedicated to Mining and Analysis of Transcriptomics data using common biostatistic result files (statistical test result table, normalised data table and samples-groups information). This application helps biologists to perform data exploration with PCA, Venn diagrams, StripCharts, volcanoplots, and Heatmap clustering of genes lists (selecting statistical thresholds) and functional enrichment analyses using a connection to enrichr. https://matrixapp.sk8.inrae.fr

Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées

BioMa component of the phenology model in SiriusQuality2

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

Implements in R the Rothamsted RothC package. Adds useful functions.

Some scripts for the methylation analysis of the ChickStress project.

Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"

Docker image with Intel Fortran Compiler (and some other dev tools).

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel