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panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

https://sk8.pages-forge.inrae.fr/journee_shiny_inrae/edition_2025

https://cmidoux.pages-forge.inrae.fr/slides/

A static web site to present the team

This project aims to create a opensilex instance running on docker-compose stack

pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python

https://umrf.pages.mia.inra.fr/ranomaly/

Pipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.

Traduction française des FAIR4RS Principles (voir README)