Explore projects

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées

FrenchCropUsage is a thesaurus of types of crops, organized according to their destination (direct human food, animal feed, food industry, etc) and the type of culture system (field crop, market gardening, etc.).

Implementation of the FAO CropWat model in an R package

Docs : https://optirrighive.pages-forge.inrae.fr/OptirrigCORE.api/dev/ Swagger : https://api.optirrig.g-eau.fr/__docs__/

What is “OptirrigCORE.api” package ?

OptirrigCORE.api is a small R package that turns the core functions of OptirrigCORE into a web service. Built on top of Plumber, it makes it possible to start projects, load configurations, prepare simulation inputs, run irrigation models and retrieve results—all over HTTP instead of inside an R session.

Structural Variation detection using SNiP genotyping data in R

dbeel integration

On-line doctoral training on EMULSION

Un outil d’aide à la décision (indicateurs, analyses des indicateurs) pour une meilleure gestion des risques associés aux ongulés sauvages, plus particulièrement les dégâts causés par les ongulés sauvages sur la régénération forestière. Collaboration avec l’OFB pour répondre à un besoin des gestionnaires et des décideurs, mais également en réponse à la fiche d’action 4.3 issue des assises de la forêt et du bois.

https://barometre-national-foret-ongules.sk8.inrae.fr

job array allows managing list of jobs execution across sge and PBS scheduler system. each job is considered as an independent task. DAG management is also possible by defining constraints between job array

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigCORE

What is “OptirrigCORE” package ? The OptirrigCORE package in R is based on the Optirrig model. It facilitates the extraction and formatting of observation data used by the model, as well as the integration of plant, soil and yield descriptions. It supports various analytical methods, such as Ex-Post and Ex-Ante analyses, with a view to drawing up an optimised irrigation schedule based on the criteria. The package includes all the calculation tools needed to describe biophysical processes with a generalist approach. It can be used as a dependency or complement to modify and reinterpret biophysical descriptions. What’s more, it automates the modeling process, the description of biophysical processes and the analysis of results and performance, guaranteeing a reproducible approach. It also makes it easy to compile results in automated reports.