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SATLAND is an application to detect and characterize hotspots of change. It is based on Python libraries (xarray, Bfast, rasterio for back-end, Streamlit for Front-End)

ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Firmicutes genomes.

Command line tool to compute volume of soil samples from images to estimate soil bulk density as in

Coulouma G, Feurer D, Vinatier F, Huttel O. Assessing new sensor-based volume measurement methods for high-throughput bulk density estimation in the field under various soil conditions. Eur J Soil Sci. 2021; 72: 2049–2061. https://doi.org/10.1111/ejss.13115

STAC tools to simplify STAC use: local STAC creation, filter and process STAC ItemCollections (local and remote).

Documentation

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel