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MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

R package for OpenFLUID

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

The two libraries of the XpertMass project are libXpertMassCore and libXpertMassGui. The two libraries expose common non-gui and gui functionalities, respectively, that are used by two software pieces of the msXpertSuite organization: MassXpert and MineXpert.

pubilc repository for the Ambhas groundwater model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/ambhas_cpp/

Pour projets SeaTech sur la Fast Marching Method

pydynamics, a code to write vle models in python language.

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

Remote module for Orfeo ToolBox

utilitaire pour la manipulation de fichiers Fasta : ajout de métadonnées (espèces, numéro de release, source...), traduction, traitements (decoy, reverse, peptide reverse...), combinaison de fichiers.

Coupling crops models with populations dynamics models in heterogeneous and dynamics landscapes.