Explore projects

A fork of GRNBoost2 arboreto from https://github.com/aertslab/arboreto.git at 11/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression.

Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes

toolbar is an exact discrete optimization tool for graphical models. For most use cases, it has been obsoleted by toulbar2 (on GitHub).

Documentation and presentation materials of the project

A simple pipeline to assemble bacterial genomes from ONT sequencing

Collection of indexer for FAIDARE, WheatIS,

Implements in R the Rothamsted RothC package. Adds useful functions.

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

Annotation pipeline (transform SGBDR/CSV data to rdf)

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)