Explore projects

instances of various cost function networks papers stored further benchmarking

Hackathon snakemake 2020

Receptacle de methode numérique pour la simulation EDI

Approche EF et Fourier

EF:

Fourier: Simulateurs basés sur la transformé de Fourier discrete (discrete Fourier transform FFTW) pour des modèles (3D) de dynamique de population ou de génétique.

A quick overview of the changes of Covid-19 mortality in the most affected countries of the European Union + the United Kingdom and of Africa. https://umr-astre.pages.mia.inra.fr/covid19-mortality/

Guidelines pour modèles mixtes

Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)

This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.

MetaQTL is a Java package designed to perform the integration of data from the field of gene mapping experiments (e.g molecular markers, QTL, candidate genes, etc...). This package consists in a modular library and several programs written in pure Java. These programs can perform various tasks, including formatting, analyzing and visualizing data or results produced by MetaQTL.

"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.

Modified of the code CleaveLand to have the results for all isoforms. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Addo-Quaye C &. Bioinformatics.

Meteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level

pubilc repository for the GroundWaterNitrogen nitrogen content in groundwater model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/groundwaternitrogen/

Eremothecium gossypii ATCC 10895 complete genome and annotation data.

Torulaspora microellipsoides CLIB 830 complete genome and annotation data.

Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics

pubilc repository for the MF1_2 farm model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/mf1_2/

Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).

The two libraries of the XpertMass project are libXpertMassCore and libXpertMassGui. The two libraries expose common non-gui and gui functionalities, respectively, that are used by two software pieces of the msXpertSuite organization: MassXpert and MineXpert.