Explore projects

Pan1c: a Snakemake workflow to build chromosome level pangenomes.

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

Ecologging est un projet de station instrumentée connectée, fiable et évolutive. Une attention particulière a été portée sur la modularité, l'accessibilité, la réparabilité et l'open-source. La station DIY permet d'acquérir des données météo (Pression, Température, Humidité, Vent, Luminosité, Rayonnement) mais aussi humidité du sol, hauteur de nappe, etc. Le microcontrôleur est un arduino Mega associé à une carte SIM7600 et des capteurs choisis pour leur bon rapport coût/performance. https://hal.science/hal-05162126v2

Life game (Conway) using vle::discrete_time cells and vle.generic.builder Builder model to generate cells and their connexions

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

A demo-genetic individual-based model for Atlantic salmon populations

The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Code storage Area of the RECORD Project packages.

Source code of BIP software (Biological Image Processing)

OpenFLUID framework and applications

mechanistic-statistical environment

https://msegrp.pages-forge.inrae.fr/mse

Free-D libraries: a collection of C++ libraries

GeneralDichotomy: a general multi-objective optimization package

https://umr-astre.pages.mia.inra.fr/sit-methods/