Explore projects

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigTOOLS

OptirrigTOOLS is a lightweight R package meant to gather diverse helper functions used across the Optirrig ecosystem.

GenoFig is a tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It was designed to be as easy to use as possible for biologists.

RADIS - Retrieve Agronomic Data in a Sector, R package support : https://umr-g-eau.pages-forge.inrae.fr/radis

The radis package aims to facilitate the extraction of environmental data from various cartographic or spatial sources or APIs. It allows for the retrieval of this information using specific spatial shape. This package also formats the extracted data in a way that makes it easily exploitable for further analysis.

https://genotoul-bioinfo.pages-forge.inrae.fr/d-genies/dgenies-new-proto-ui

A simple pipeline to assemble bacterial genomes from ONT sequencing

Notes and Devs as Software user

Présentation en ligne sur GitLab Pages inspiré par Formation INRAE PACA

Docs : https://optirrighive.pages.mia.inra.fr/OptirrigVIEW

OptirrigVIEW is a lightweight R package meant to gather visualization functions used across the Optirrig ecosystem.

https://optirrighive.pages.mia.inra.fr/OptirrigBEET

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)