Merge branch 'dev' into 'master'

.gitignore

.gitlab-ci.yml

README.md

bin/filter_diamond_hits.py

bin/merge_abundance_and_functional_annotations.py

bin/merge_contig_quantif_perlineage.py

bin/merge_kaiju_results.py

bin/quantification_by_contig_lineage.py

conf/base.config

conf/big_test_genotoul.config

conf/genotoul.config

conf/test_genotoul_testq.config

conf/test_genotoul_workq.config

conf/test_local.config

docs/README.md

docs/installation.md

docs/output.md

docs/usage.md

docs/use_case.md

env/Singularity_recipe_mosdepth