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f8dfc3ea

Commit f8dfc3ea authored 2 months ago by Mariene Wan

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Merge branch 'dev'

parents ed6cfc5e c1785b69

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Changes 12

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PASTEC_snakemake/Snakefile 6 additions, 4 deletions

PASTEC_snakemake/Snakefile
TEannot_snakemake/Snakefile 1 addition, 5 deletions

TEannot_snakemake/Snakefile
TEannot_snakemake/scripts/Launch_NTE50andLTE50.py 1 addition, 1 deletion

TEannot_snakemake/scripts/Launch_NTE50andLTE50.py
TEdenovo_snakemake/Snakefile 7 additions, 3 deletions

TEdenovo_snakemake/Snakefile
TEdenovo_snakemake/launch_TEdenovo.sbatch 21 additions, 0 deletions

TEdenovo_snakemake/launch_TEdenovo.sbatch
script_repet/repet_tools/PASTEC/DecisionMakerPerConsensus.py 5 additions, 2 deletions

script_repet/repet_tools/PASTEC/DecisionMakerPerConsensus.py
script_repet/repet_tools/annot_pipe/GetNTE50AndLTE50.py 8 additions, 4 deletions

script_repet/repet_tools/annot_pipe/GetNTE50AndLTE50.py
script_repet/repet_tools/commons/tools/AnnotationStats.py 10 additions, 2 deletions

script_repet/repet_tools/commons/tools/AnnotationStats.py
script_repet/repet_tools/commons/tools/GetSpecificTELibAccordingToAnnotation.py 0 additions, 2 deletions

...ls/commons/tools/GetSpecificTELibAccordingToAnnotation.py
script_repet/repet_tools/commons/tools/GiveInfoFasta.py 0 additions, 1 deletion

script_repet/repet_tools/commons/tools/GiveInfoFasta.py
script_repet/repet_tools/commons/tools/PostAnalyzeTELib.py 5 additions, 3 deletions

script_repet/repet_tools/commons/tools/PostAnalyzeTELib.py
script_repet/repet_tools/commons/tools/RemoveRedundancyBasedOnCI.py 3 additions, 3 deletions

...et/repet_tools/commons/tools/RemoveRedundancyBasedOnCI.py

with 67 additions and 30 deletions

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