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IMPROVE: initialise chromosomeMap dict while reading input GFF

Merged IMPROVE: initialise chromosomeMap dict while reading input GFF
5-improve-renamegffids-py-build-chromosome-map-based-on-input-gff-and-not-mapping-file into missing_conda_rules
Merged Helene Rimbert requested to merge 5-improve-renamegffids-py-build-chromosome-map-based-on-input-gff-and-not-mapping-file into missing_conda_rules

Closes #5

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