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08268dae

Commit 08268dae authored 5 years ago by Helene Rimbert

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1st dev fial version

parent b18ab4a3

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Changes 13

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Snakefile 25 additions, 4 deletions

Snakefile
bin/checkFinalAnnot.py 137 additions, 0 deletions

bin/checkFinalAnnot.py
bin/convertGmapCoords.py 3 additions, 3 deletions

bin/convertGmapCoords.py
bin/gmapRescue.sh 60 additions, 47 deletions

bin/gmapRescue.sh
bin/microMappingPipeline.py 17 additions, 27 deletions

bin/microMappingPipeline.py
bin/recalcCoordsFromBlat.py 149 additions, 142 deletions

bin/recalcCoordsFromBlat.py
bin/recalcGmapRescue.sh 17 additions, 15 deletions

bin/recalcGmapRescue.sh
bin/renameGffID.py 324 additions, 0 deletions

bin/renameGffID.py
config.yaml 6 additions, 3 deletions

config.yaml
dag.pdf 0 additions, 0 deletions

dag.pdf
rulegraph.pdf 0 additions, 0 deletions

rulegraph.pdf
rules/bedtoolsClosest.smk 0 additions, 1 deletion

rules/bedtoolsClosest.smk
rules/geneAnchoring.smk 145 additions, 19 deletions

rules/geneAnchoring.smk

with 883 additions and 261 deletions

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