README.md

Axis3: Metagenomics amplicon

Identification and evaluation of new target regions for metagenomics amplicon long reads

region_identification_workflow

Workflow implemented in nextflow to identify potential new target regions and extract them from refseq genomes.

taxonomic_resolution

Evaluation of the taxonomic resolution of potential target regions.

primer_design

Design and in silico evaluation of new designed primers to amplify teh identified regions

turorials

Step by step guidelines on how to use scripts and method developped in this repository.