* Major modification on mcq.compute.cluster and mcq.plot.cluster, the function is now able to compute clusters with different method and clusters numbers and output a comparison off quality of each method/numbers. See help for more details. the function plot was modify to be able to plot a cluster in the list of tested ones.
* Modification of function mcq.get.compar to be able to work with new cmcq.clusters structure.
* Creation of mcq.select.cluster to be able to select cluster of interest in a cmcq.cluster object. See help for details
* Mcq.write.metadata.template : adding type option to specify the type of file exported. See help for more details
* Correction of a bug in mcq.compute.protein.imputation that do not impute proteins
* Correction of a bug in mcq.compute.anova that select glm model for SpectralCounting object with normalised data instead of lm model with square root transformation
* Correction of a bug in mcq.compute.anova that raise an error and does not permit to perform anova with glm Model
* Correction of a bug in mcq.plot.peptide.intensity
# Version 0.6.1
* Rename mcq.merge.metadata to mcq.add.metadata
...
...
@@ -13,5 +26,5 @@
* Correct a bug on the test of metadata columns names in the file that permit to have forbidden columns. The error message is now clear.
PeakCounting support is discontinued. Error may be always present concernings this part of the script in this version
* correction of a error in mcq.compute.pca with spectralcoutning data that not allowed to plot pca if there is only one factor choosed for labels with pca object made with the sames factor
* Remove a limitation in mcq.drop.uncorrelated.peptide to permit computation of correlation even is there is less than 9 peptide for a protein.
* Remove a limitation in mcq.drop.uncorrelated.peptide to permit computation of correlation even is there is less than 9 peptide for a protein.
* update help for mcq.write.compar in case of writing file from pca object
