Commits · grouping-protein_0.2.1-10 · PAPPSO / groupingprotein · GitLab

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Aug 26, 2014
- grouping-protein (0.2.1-10) wheezy · a4bafa6c
  Olivier Langella authored 10 years ago
  
  grouping-protein_0.2.1-10
  
  a4bafa6c
- new messages on stderr to display non informative subgroup removal progress · 2bf14ae0
  Olivier Langella authored 10 years ago
  
  2bf14ae0
Aug 25, 2014
- change removal strategy : choosing the greeter peptide (peptide length) in priority · 335bb57a
  Olivier Langella authored 10 years ago
  
  335bb57a
- this is not a const vector : the end is moving · cd1b169f
  Olivier Langella authored 10 years ago
  
  Revert "optimizing loop in remove non informative" This reverts commit 8381541f.
  cd1b169f
- optimizing loop in remove non informative · 8381541f
  Olivier Langella authored 10 years ago
  
  8381541f
- optimize loop iterator · 5dc16b47
  Olivier Langella authored 10 years ago
  
  5dc16b47
Jul 18, 2014
- grouping-protein (0.2.1-9) wheezy · 9c726ae2
  Olivier Langella authored 10 years ago
  
  grouping-protein_0.2.1-9
  
  9c726ae2
- better dg removal algo · 6070f5c8
  Olivier Langella authored 10 years ago
  
  more efficient results writer
  6070f5c8
Jul 16, 2014
- grouping-protein (0.2.1-8) · 9d029cd3
  Olivier Langella authored 10 years ago
  
  grouping-protein_0.2.1-8
  
  9d029cd3
- trying to speed up subgroup removal · 19fc4674
  Olivier Langella authored 10 years ago
  
  19fc4674
- trying to speed up results writing · 175a9e42
  Olivier Langella authored 10 years ago
  
  175a9e42
Jun 25, 2014
- new display help message for --no-sg-removal option · 11c0558a
  Olivier Langella authored 10 years ago
  
  11c0558a
Jun 11, 2014
- fine tuning to avoid unneed operations · e1d03fcf
  Olivier Langella authored 10 years ago
  
  e1d03fcf
- hard work and tests to get a non informative subgroup removal OK · 96114af2
  Olivier Langella authored 10 years ago
  
  96114af2
- grouping-protein (0.2.1-7) wheezy · 9da5bed0
  Olivier Langella authored 10 years ago
  
  9da5bed0
Jun 10, 2014
- new option to avoid non informative subgroup removal · e57354b7
  Olivier Langella authored 10 years ago
  
  e57354b7
Jun 09, 2014
- grouping-protein (0.2.1-6) wheezy · ee19537b
  Olivier Langella authored 10 years ago
  
  ee19537b
- yes yes, good test · a09cf954
  Olivier Langella authored 10 years ago
  
  a09cf954
- there is one problem to solve · 36567f6c
  Olivier Langella authored 10 years ago
  
  36567f6c
Jun 08, 2014
- bug fixed in peptide2subgroup map · f0946952
  Olivier Langella authored 10 years ago
  
  f0946952
- new strategy to remove non informative subgroups in group · 10b479e0
  Olivier Langella authored 10 years ago
  
  THIS is NOT FINISHED
  10b479e0
- it's working but we have a perf problem removing non informative subgroups · e44fc01d
  Olivier Langella authored 10 years ago
  
  e44fc01d
Jun 07, 2014
- grouping-protein (0.2.1-5) wheezy · b46ff2d5
  Olivier Langella authored 10 years ago
  
  b46ff2d5
- new optimization in subgrouset · b357e48b
  Olivier Langella authored 10 years ago
  
  b357e48b
- grouping-protein (0.2.1-4) wheezy · 86b03e14
  Olivier Langella authored 10 years ago
  
  86b03e14
- important optimization · d160303e
  Olivier Langella authored 10 years ago
  
  d160303e
Jun 06, 2014
- grouping-protein (0.2.1-3) wheezy · 8696b015
  Olivier Langella authored 10 years ago
  
  8696b015
- perf far better deindexing peptide on the fly · 5645c2b0
  Olivier Langella authored 10 years ago
  
  5645c2b0
- subgroupset is now a list for better perf · 8ba85a72
  Olivier Langella authored 10 years ago
  
  perf tuning in the fasta grouper
  8ba85a72
Jun 05, 2014
- little mistake fixed : 1 peptide could be shared by many proteins... · 03c6d518
  Olivier Langella authored 10 years ago
  
  03c6d518
- close if block · 270565a1
  Olivier Langella authored 10 years ago
  
  270565a1
- grouping-protein (0.2.1-2) wheezy · c4d003a5
  Olivier Langella authored 10 years ago
  
  c4d003a5
- set Debug compilation by default but fixes debian package as Release version · bef42589
  Olivier Langella authored 10 years ago
  
  bef42589
Jun 04, 2014
- testing new algo : far better if it works · 089a4741
  Olivier Langella authored 10 years ago
  
  089a4741
May 16, 2014
- grouping-protein (0.2.1-1) wheezy · 1cebcd7b
  Olivier Langella authored 10 years ago
  
  1cebcd7b
May 07, 2014
- read files one by one (bug found by T. Balliau) · ebeda23c
  Olivier Langella authored 10 years ago
  
  ebeda23c
May 05, 2014
- remove debug protein message · 207809be
  Olivier Langella authored 10 years ago
  
  207809be
May 02, 2014
- new non informative order string · 946ec187
  Olivier Langella authored 10 years ago
  
  946ec187
- new comment · d9d06907
  Olivier Langella authored 10 years ago
  
  d9d06907
- index and order groups now takes into account number of scans and of subgroups · b8a4cafc
  Olivier Langella authored 10 years ago
  
  b8a4cafc