Commits · main · pangepop / MSpangepop

Nov 04, 2024
- add small script to split the fasta file · 097404da
  PIAT LUCIEN authored 4 months ago
  
  097404da
- Fixes #29, add job file for CBIB HPC · b11d56a4
  PIAT LUCIEN authored 4 months ago
  
  b11d56a4
Oct 31, 2024
- revert changes · 90ac0130
  PIAT LUCIEN authored 4 months ago
  
  90ac0130
- Relocate readme info · 7d9f9179
  PIAT LUCIEN authored 4 months ago
  
  7d9f9179
- Remove my email · 82e562a4
  PIAT LUCIEN authored 4 months ago
  
  82e562a4
- Update readme · a1f2bffb
  PIAT LUCIEN authored 4 months ago
  
  a1f2bffb
- Work on #26 · e99c23bd
  PIAT LUCIEN authored 4 months ago
  
  e99c23bd
- Revised ULM · 09c194dc
  PIAT LUCIEN authored 4 months ago
  
  09c194dc
Oct 30, 2024
- add more ram · 60a5f806
  PIAT LUCIEN authored 4 months ago
  
  60a5f806
- better clarity · 59a5848e
  PIAT LUCIEN authored 4 months ago
  
  59a5848e
- change variable name · 20929bdc
  PIAT LUCIEN authored 4 months ago
  
  20929bdc
- add more documentation · 91443da8
  PIAT LUCIEN authored 4 months ago
  
  91443da8
- add correct reco rate · 996648d9
  PIAT LUCIEN authored 4 months ago
  
  996648d9
- Fixes #28 #25 #17 #16 and #15 : Redo the variant generation script with better... · 53df06fe
  PIAT LUCIEN authored 4 months ago
  
  Fixes #28 #25 #17 #16 and #15 : Redo the variant generation script with better logic, I/O and clarity
  53df06fe
- Add a suite for I operations · d0837471
  PIAT LUCIEN authored 4 months ago
  
  d0837471
- add a variant class and its method · 6b3053a3
  PIAT LUCIEN authored 4 months ago
  
  6b3053a3
- relocate files · f527e383
  PIAT LUCIEN authored 4 months ago
  
  f527e383
Oct 29, 2024
- Add warning for issues #25 #26 #27 · 1693584f
  PIAT LUCIEN authored 4 months ago
  
  1693584f
- Fixes #24 : Create SLURM config for all rules · 6449b944
  PIAT LUCIEN authored 4 months ago
  
  6449b944
- Add small QOL · 679f4320
  PIAT LUCIEN authored 4 months ago
  
  679f4320
Oct 28, 2024
- update for better cluster experience · 0d2482a4
  PIAT LUCIEN authored 4 months ago
  
  0d2482a4
- Include the slurm_logs direcrory · 78a0fecc
  PIAT LUCIEN authored 4 months ago
  
  78a0fecc
- Add the dag · 18f26d35
  PIAT LUCIEN authored 4 months ago
  
  18f26d35
- Add few dependencies · d6272430
  PIAT LUCIEN authored 4 months ago
  
  d6272430
- Add lazy file writing to save I/O operations · 39da3be7
  PIAT LUCIEN authored 4 months ago
  
  39da3be7
- Fixes #6 : Make reco_rate accessible · c0982517
  PIAT LUCIEN authored 4 months ago
  
  c0982517
- add documentation · 39cfd7f2
  PIAT LUCIEN authored 4 months ago
  
  39cfd7f2
- Fixes #13 : Merge VCF corectely · d202fb2a
  PIAT LUCIEN authored 4 months ago
  
  d202fb2a
- Fixes #7 : include vg pipeline in the main VF · e6abe81e
  PIAT LUCIEN authored 4 months ago
  
  e6abe81e
- convert pipeline graph to svg · 9bd46797
  PIAT LUCIEN authored 4 months ago
  
  9bd46797
Oct 25, 2024
- Fixes #13 : Use proper tool to merge vcf · 440f62bb
  PIAT LUCIEN authored 4 months ago
  
  440f62bb
- update readme · b72d9b5b
  PIAT LUCIEN authored 4 months ago
  
  b72d9b5b
- add graph construction rules · 39caa5c5
  PIAT LUCIEN authored 4 months ago
  
  39caa5c5
- Delete unused files · 019bda13
  PIAT LUCIEN authored 4 months ago
  
  019bda13
- use pwd insted of path · 5d74f58f
  PIAT LUCIEN authored 4 months ago
  
  5d74f58f
- Update readme for clarity · 2c2f2ba7
  PIAT LUCIEN authored 4 months ago
  
  2c2f2ba7
- Fixes #3 : Automatically add chromosomes to the configuration file · 021171b8
  PIAT LUCIEN authored 4 months ago
  
  021171b8
Oct 24, 2024
- Relocate file for clarity · 1234a571
  PIAT LUCIEN authored 4 months ago
  
  1234a571
- Create an index of chromosomes in a yaml file · bb07e1d4
  PIAT LUCIEN authored 4 months ago
  
  bb07e1d4
- dont track yaml files · de72d3d3
  PIAT LUCIEN authored 4 months ago
  
  de72d3d3